Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG60_RS06880 Genome accession   NZ_CP094177
Coordinates   1429390..1430703 (-) Length   437 a.a.
NCBI ID   WP_245084452.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe062     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424390..1435703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS06850 (MPG60_06850) nadC 1424853..1425674 (-) 822 WP_231224267.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG60_RS06855 (MPG60_06855) nadA 1425674..1426684 (-) 1011 WP_245084445.1 quinolinate synthase NadA -
  MPG60_RS06860 (MPG60_06860) - 1426671..1427477 (-) 807 WP_245084447.1 phosphatidylserine decarboxylase -
  MPG60_RS06865 (MPG60_06865) - 1427474..1427977 (-) 504 WP_000953102.1 hypothetical protein -
  MPG60_RS06870 (MPG60_06870) - 1427990..1428484 (-) 495 WP_245084450.1 hypothetical protein -
  MPG60_RS06875 (MPG60_06875) mqnP 1428477..1429361 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG60_RS06880 (MPG60_06880) comEC/comE3 1429390..1430703 (-) 1314 WP_245084452.1 ComEC/Rec2 family competence protein Machinery gene
  MPG60_RS06885 (MPG60_06885) - 1430700..1432166 (-) 1467 WP_245084454.1 replicative DNA helicase -
  MPG60_RS06890 (MPG60_06890) - 1432177..1433571 (-) 1395 WP_245084456.1 NAD(P)H-hydrate dehydratase -
  MPG60_RS06895 (MPG60_06895) crdS 1433574..1434776 (-) 1203 WP_245085756.1 copper-sensing histidine kinase CrdS -
  MPG60_RS06900 (MPG60_06900) crdR 1434742..1435383 (-) 642 WP_075658246.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50159.25 Da        Isoelectric Point: 9.8860

>NTDB_id=668043 MPG60_RS06880 WP_245084452.1 1429390..1430703(-) (comEC/comE3) [Helicobacter pylori strain Hpfe062]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=668043 MPG60_RS06880 WP_245084452.1 1429390..1430703(-) (comEC/comE3) [Helicobacter pylori strain Hpfe062]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTTTTGCATGCTGTAGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment