Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG60_RS05390 Genome accession   NZ_CP094177
Coordinates   1126420..1126824 (-) Length   134 a.a.
NCBI ID   WP_212788212.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121420..1131824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS05350 (MPG60_05350) - 1121604..1122689 (-) 1086 WP_245084014.1 hypothetical protein -
  MPG60_RS05355 (MPG60_05355) - 1122679..1123464 (-) 786 WP_245084016.1 hypothetical protein -
  MPG60_RS05360 (MPG60_05360) - 1123464..1123845 (-) 382 Protein_1046 DUF1294 domain-containing protein -
  MPG60_RS05365 (MPG60_05365) - 1124173..1124334 (-) 162 WP_014536434.1 lysozyme -
  MPG60_RS05370 (MPG60_05370) - 1124521..1124844 (-) 324 WP_245084019.1 lysozyme -
  MPG60_RS05375 (MPG60_05375) - 1124855..1125415 (-) 561 WP_245084021.1 hypothetical protein -
  MPG60_RS05380 (MPG60_05380) - 1125399..1125737 (-) 339 WP_245084023.1 hypothetical protein -
  MPG60_RS05385 (MPG60_05385) - 1125968..1126288 (-) 321 WP_245084025.1 tetratricopeptide repeat protein -
  MPG60_RS05390 (MPG60_05390) dprB 1126420..1126824 (-) 405 WP_212788212.1 Holliday junction resolvase RuvX Machinery gene
  MPG60_RS05395 (MPG60_05395) dprA 1126821..1127621 (-) 801 WP_000840086.1 DNA-processing protein DprA Machinery gene
  MPG60_RS05400 (MPG60_05400) minE 1127633..1127866 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG60_RS05405 (MPG60_05405) minD 1127863..1128669 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG60_RS05410 (MPG60_05410) ilvC 1128694..1129686 (-) 993 WP_245085738.1 ketol-acid reductoisomerase -
  MPG60_RS05420 (MPG60_05420) - 1129934..1130716 (+) 783 WP_245084027.1 NAD+ synthase -
  MPG60_RS05425 (MPG60_05425) - 1130713..1131651 (+) 939 WP_245084029.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15220.70 Da        Isoelectric Point: 9.1283

>NTDB_id=668039 MPG60_RS05390 WP_212788212.1 1126420..1126824(-) (dprB) [Helicobacter pylori strain Hpfe062]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=668039 MPG60_RS05390 WP_212788212.1 1126420..1126824(-) (dprB) [Helicobacter pylori strain Hpfe062]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTGCGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948

Multiple sequence alignment