Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG43_RS06920 Genome accession   NZ_CP094175
Coordinates   1436517..1437830 (-) Length   437 a.a.
NCBI ID   WP_245030289.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe063     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431517..1442830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS06890 (MPG43_06890) nadC 1431981..1432802 (-) 822 WP_245030275.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG43_RS06895 (MPG43_06895) nadA 1432802..1433812 (-) 1011 WP_245030277.1 quinolinate synthase NadA -
  MPG43_RS06900 (MPG43_06900) - 1433802..1434605 (-) 804 WP_245030285.1 phosphatidylserine decarboxylase -
  MPG43_RS06905 (MPG43_06905) - 1434602..1435105 (-) 504 WP_000953083.1 hypothetical protein -
  MPG43_RS06910 (MPG43_06910) - 1435118..1435612 (-) 495 WP_245030287.1 hypothetical protein -
  MPG43_RS06915 (MPG43_06915) mqnP 1435605..1436489 (-) 885 WP_180462873.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG43_RS06920 (MPG43_06920) comEC/comE3 1436517..1437830 (-) 1314 WP_245030289.1 ComEC/Rec2 family competence protein Machinery gene
  MPG43_RS06925 (MPG43_06925) - 1437827..1439287 (-) 1461 WP_245030291.1 replicative DNA helicase -
  MPG43_RS06930 (MPG43_06930) - 1439298..1440692 (-) 1395 WP_245030293.1 NAD(P)H-hydrate dehydratase -
  MPG43_RS06935 (MPG43_06935) crdS 1440695..1441897 (-) 1203 WP_245031276.1 copper-sensing histidine kinase CrdS -
  MPG43_RS06940 (MPG43_06940) crdR 1441863..1442504 (-) 642 WP_245030295.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49970.89 Da        Isoelectric Point: 9.7739

>NTDB_id=668022 MPG43_RS06920 WP_245030289.1 1436517..1437830(-) (comEC/comE3) [Helicobacter pylori strain Hpfe063]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVHRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ILVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVDLGSLLDGILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=668022 MPG43_RS06920 WP_245030289.1 1436517..1437830(-) (comEC/comE3) [Helicobacter pylori strain Hpfe063]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCACCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ATATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGATTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment