Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG43_RS05405 Genome accession   NZ_CP094175
Coordinates   1137650..1138054 (-) Length   134 a.a.
NCBI ID   WP_245029967.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132650..1143054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG43_RS05360 (MPG43_05360) - 1132782..1133906 (-) 1125 Protein_1045 hypothetical protein -
  MPG43_RS05365 (MPG43_05365) - 1133896..1134681 (-) 786 WP_245029956.1 hypothetical protein -
  MPG43_RS05370 (MPG43_05370) - 1134681..1135062 (-) 382 Protein_1047 DUF1294 domain-containing protein -
  MPG43_RS07765 - 1135176..1135310 (-) 135 WP_280636002.1 hypothetical protein -
  MPG43_RS05375 (MPG43_05375) - 1135401..1135562 (-) 162 WP_017280151.1 hypothetical protein -
  MPG43_RS05380 (MPG43_05380) - 1135582..1136076 (-) 495 WP_245029959.1 lysozyme -
  MPG43_RS05385 (MPG43_05385) - 1136087..1136647 (-) 561 WP_245029961.1 hypothetical protein -
  MPG43_RS05390 (MPG43_05390) - 1136631..1136969 (-) 339 WP_050851275.1 hypothetical protein -
  MPG43_RS05400 (MPG43_05400) - 1137319..1137519 (-) 201 WP_245029965.1 sel1 repeat family protein -
  MPG43_RS05405 (MPG43_05405) dprB 1137650..1138054 (-) 405 WP_245029967.1 Holliday junction resolvase RuvX Machinery gene
  MPG43_RS05410 (MPG43_05410) dprA 1138051..1138851 (-) 801 WP_245029969.1 DNA-processing protein DprA Machinery gene
  MPG43_RS05415 (MPG43_05415) minE 1138863..1139096 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG43_RS05420 (MPG43_05420) minD 1139093..1139899 (-) 807 WP_245029971.1 septum site-determining protein MinD -
  MPG43_RS05425 (MPG43_05425) ilvC 1139923..1140915 (-) 993 WP_245029973.1 ketol-acid reductoisomerase -
  MPG43_RS05435 (MPG43_05435) - 1141164..1141946 (+) 783 WP_245029974.1 NAD+ synthase -
  MPG43_RS05440 (MPG43_05440) - 1141943..1142881 (+) 939 WP_231202035.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15385.90 Da        Isoelectric Point: 9.4664

>NTDB_id=668018 MPG43_RS05405 WP_245029967.1 1137650..1138054(-) (dprB) [Helicobacter pylori strain Hpfe063]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=668018 MPG43_RS05405 WP_245029967.1 1137650..1138054(-) (dprB) [Helicobacter pylori strain Hpfe063]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment