Detailed information NTG0668006

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG49_RS07760
• Genome accession: NZ_CP094173
• Coordinates: 1605951..1607153 (+)
• Length: 400 a.a.
• NCBI ID: WP_245052291.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1600951..1612153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG49_RS07745 (MPG49_07745)	-	1603021..1603161 (+)	141	WP_015643441.1	hypothetical protein	-
MPG49_RS07750 (MPG49_07750)	-	1603154..1604293 (+)	1140	WP_245052287.1	VirB8/TrbF family protein	-
MPG49_RS07755 (MPG49_07755)	-	1604290..1605954 (+)	1665	WP_245052289.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG49_RS07760 (MPG49_07760)	comB10	1605951..1607153 (+)	1203	WP_245052291.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG49_RS07765 (MPG49_07765)	-	1607137..1609398 (+)	2262	WP_245052293.1	collagen-like protein	-
MPG49_RS07770 (MPG49_07770)	-	1609411..1610388 (+)	978	WP_245052295.1	hypothetical protein	-
MPG49_RS07775 (MPG49_07775)	-	1610406..1610678 (+)	273	WP_001917649.1	hypothetical protein	-
MPG49_RS07780 (MPG49_07780)	-	1610683..1611627 (+)	945	WP_033582549.1	CpaF/VirB11 family protein	-
MPG49_RS07785 (MPG49_07785)	-	1611624..1612142 (+)	519	WP_120869111.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44752.40 Da
• Isoelectric Point: 9.9018

>NTDB_id=668006 MPG49_RS07760 WP_245052291.1 1605951..1607153(+) (comB10) [Helicobacter pylori strain Hpfe0001]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPINSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=668006 MPG49_RS07760 WP_245052291.1 1605951..1607153(+) (comB10) [Helicobacter pylori strain Hpfe0001]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTACAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACGATTACGGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAATTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.417	98.25	0.515