Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG49_RS07725 Genome accession   NZ_CP094173
Coordinates   1599643..1599927 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594643..1604927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS07705 (MPG49_07705) - 1595229..1597692 (+) 2464 Protein_1504 type I restriction-modification system subunit M -
  MPG49_RS07710 (MPG49_07710) - 1597701..1598222 (+) 522 Protein_1505 restriction endonuclease subunit S -
  MPG49_RS07715 (MPG49_07715) - 1598275..1599063 (+) 789 WP_245052282.1 integrase -
  MPG49_RS07720 (MPG49_07720) - 1599167..1599646 (+) 480 WP_245052284.1 hypothetical protein -
  MPG49_RS07725 (MPG49_07725) comB2 1599643..1599927 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG49_RS07730 (MPG49_07730) comB3 1599938..1600201 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG49_RS07735 (MPG49_07735) - 1600212..1600448 (+) 237 WP_180386948.1 hypothetical protein -
  MPG49_RS07740 (MPG49_07740) - 1600448..1603024 (+) 2577 WP_245052286.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG49_RS07745 (MPG49_07745) - 1603021..1603161 (+) 141 WP_015643441.1 hypothetical protein -
  MPG49_RS07750 (MPG49_07750) - 1603154..1604293 (+) 1140 WP_245052287.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=668004 MPG49_RS07725 WP_000736478.1 1599643..1599927(+) (comB2) [Helicobacter pylori strain Hpfe0001]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=668004 MPG49_RS07725 WP_000736478.1 1599643..1599927(+) (comB2) [Helicobacter pylori strain Hpfe0001]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGAGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment