Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG49_RS07730 | Genome accession | NZ_CP094173 |
| Coordinates | 1599938..1600201 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | A0AB33Z5Y9 |
| Organism | Helicobacter pylori strain Hpfe0001 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1594938..1605201
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG49_RS07705 (MPG49_07705) | - | 1595229..1597692 (+) | 2464 | Protein_1504 | type I restriction-modification system subunit M | - |
| MPG49_RS07710 (MPG49_07710) | - | 1597701..1598222 (+) | 522 | Protein_1505 | restriction endonuclease subunit S | - |
| MPG49_RS07715 (MPG49_07715) | - | 1598275..1599063 (+) | 789 | WP_245052282.1 | integrase | - |
| MPG49_RS07720 (MPG49_07720) | - | 1599167..1599646 (+) | 480 | WP_245052284.1 | hypothetical protein | - |
| MPG49_RS07725 (MPG49_07725) | comB2 | 1599643..1599927 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG49_RS07730 (MPG49_07730) | comB3 | 1599938..1600201 (+) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| MPG49_RS07735 (MPG49_07735) | - | 1600212..1600448 (+) | 237 | WP_180386948.1 | hypothetical protein | - |
| MPG49_RS07740 (MPG49_07740) | - | 1600448..1603024 (+) | 2577 | WP_245052286.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| MPG49_RS07745 (MPG49_07745) | - | 1603021..1603161 (+) | 141 | WP_015643441.1 | hypothetical protein | - |
| MPG49_RS07750 (MPG49_07750) | - | 1603154..1604293 (+) | 1140 | WP_245052287.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=668005 MPG49_RS07730 WP_001177712.1 1599938..1600201(+) (comB3) [Helicobacter pylori strain Hpfe0001]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=668005 MPG49_RS07730 WP_001177712.1 1599938..1600201(+) (comB3) [Helicobacter pylori strain Hpfe0001]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |