Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG49_RS07115 Genome accession   NZ_CP094173
Coordinates   1472542..1473855 (-) Length   437 a.a.
NCBI ID   WP_245052177.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467542..1478855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS07085 (MPG49_07085) nadC 1468005..1468826 (-) 822 WP_245052171.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG49_RS07090 (MPG49_07090) nadA 1468826..1469836 (-) 1011 WP_120918311.1 quinolinate synthase NadA -
  MPG49_RS07095 (MPG49_07095) - 1469823..1470629 (-) 807 WP_245052173.1 phosphatidylserine decarboxylase -
  MPG49_RS07100 (MPG49_07100) - 1470626..1471129 (-) 504 WP_000953102.1 hypothetical protein -
  MPG49_RS07105 (MPG49_07105) - 1471142..1471636 (-) 495 WP_245052175.1 hypothetical protein -
  MPG49_RS07110 (MPG49_07110) mqnP 1471629..1472513 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG49_RS07115 (MPG49_07115) comEC/comE3 1472542..1473855 (-) 1314 WP_245052177.1 ComEC/Rec2 family competence protein Machinery gene
  MPG49_RS07120 (MPG49_07120) - 1473852..1475312 (-) 1461 WP_245052179.1 replicative DNA helicase -
  MPG49_RS07125 (MPG49_07125) - 1475323..1476717 (-) 1395 WP_245052181.1 NAD(P)H-hydrate dehydratase -
  MPG49_RS07130 (MPG49_07130) crdS 1476720..1477922 (-) 1203 WP_245053147.1 copper-sensing histidine kinase CrdS -
  MPG49_RS07135 (MPG49_07135) crdR 1477888..1478529 (-) 642 WP_154433930.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50167.06 Da        Isoelectric Point: 9.6712

>NTDB_id=667999 MPG49_RS07115 WP_245052177.1 1472542..1473855(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0001]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTREQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNILSTDFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667999 MPG49_RS07115 WP_245052177.1 1472542..1473855(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0001]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACTACCATTAAAGAACCTTTAAAAAATCTCCAATATCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAGAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCACATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAACATTTTAAGCACGGACTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment