Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG49_RS05615 Genome accession   NZ_CP094173
Coordinates   1173084..1173488 (-) Length   134 a.a.
NCBI ID   WP_245051904.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168084..1178488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS05580 (MPG49_05580) - 1168344..1169444 (-) 1101 WP_245051898.1 hypothetical protein -
  MPG49_RS05585 (MPG49_05585) - 1169434..1170219 (-) 786 WP_245051899.1 hypothetical protein -
  MPG49_RS05590 (MPG49_05590) - 1170219..1170605 (-) 387 WP_245033710.1 DUF1294 domain-containing protein -
  MPG49_RS08025 - 1170937..1171203 (-) 267 WP_021302752.1 hypothetical protein -
  MPG49_RS08030 - 1171191..1171619 (-) 429 Protein_1088 lysozyme -
  MPG49_RS05600 (MPG49_05600) - 1171630..1172190 (-) 561 WP_245051901.1 hypothetical protein -
  MPG49_RS05605 (MPG49_05605) - 1172174..1172512 (-) 339 WP_245051902.1 hypothetical protein -
  MPG49_RS05610 (MPG49_05610) - 1172701..1172955 (-) 255 WP_245051903.1 tetratricopeptide repeat protein -
  MPG49_RS05615 (MPG49_05615) dprB 1173084..1173488 (-) 405 WP_245051904.1 Holliday junction resolvase RuvX Machinery gene
  MPG49_RS05620 (MPG49_05620) dprA 1173485..1174285 (-) 801 WP_245051905.1 DNA-processing protein DprA Machinery gene
  MPG49_RS05625 (MPG49_05625) minE 1174297..1174530 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG49_RS05630 (MPG49_05630) minD 1174527..1175333 (-) 807 WP_245051906.1 septum site-determining protein MinD -
  MPG49_RS05635 (MPG49_05635) ilvC 1175357..1176349 (-) 993 WP_245051907.1 ketol-acid reductoisomerase -
  MPG49_RS05645 (MPG49_05645) - 1176598..1177380 (+) 783 WP_245051908.1 NAD+ synthase -
  MPG49_RS05650 (MPG49_05650) - 1177377..1178315 (+) 939 WP_245051909.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15289.91 Da        Isoelectric Point: 9.2792

>NTDB_id=667995 MPG49_RS05615 WP_245051904.1 1173084..1173488(-) (dprB) [Helicobacter pylori strain Hpfe0001]
MILACDVGLKRIGIAVLLNGIILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNVRIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667995 MPG49_RS05615 WP_245051904.1 1173084..1173488(-) (dprB) [Helicobacter pylori strain Hpfe0001]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGTGCTTTTAAACGGCATTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCAGACACGAACGTGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGATGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment