Detailed information NTG0667989

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG49_RS00890
• Genome accession: NZ_CP094173
• Coordinates: 186092..187054 (+)
• Length: 320 a.a.
• NCBI ID: WP_245052475.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 181092..192054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG49_RS00860 (MPG49_00860)	panD	182499..182849 (+)	351	WP_000142205.1	aspartate 1-decarboxylase	-
MPG49_RS00865 (MPG49_00865)	-	182860..183153 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG49_RS00870 (MPG49_00870)	-	183153..184148 (+)	996	WP_245053072.1	PDZ domain-containing protein	-
MPG49_RS00875 (MPG49_00875)	comB6	184156..185211 (+)	1056	WP_245053074.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG49_RS00880 (MPG49_00880)	comB7	185227..185352 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG49_RS00885 (MPG49_00885)	comB8	185349..186092 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG49_RS00890 (MPG49_00890)	comB9	186092..187054 (+)	963	WP_245052475.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG49_RS00895 (MPG49_00895)	comB10	187047..188183 (+)	1137	WP_245052477.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG49_RS00900 (MPG49_00900)	-	188253..189665 (+)	1413	WP_245052481.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG49_RS00905 (MPG49_00905)	gmd	189680..190825 (+)	1146	WP_130777842.1	GDP-mannose 4,6-dehydratase	-
MPG49_RS00910 (MPG49_00910)	-	190818..191750 (+)	933	WP_245052484.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36751.37 Da
• Isoelectric Point: 9.3756

>NTDB_id=667989 MPG49_RS00890 WP_245052475.1 186092..187054(+) (comB9) [Helicobacter pylori strain Hpfe0001]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667989 MPG49_RS00890 WP_245052475.1 186092..187054(+) (comB9) [Helicobacter pylori strain Hpfe0001]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAATGATCGCATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATATCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934