Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG49_RS00010 Genome accession   NZ_CP094173
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245052311.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0001     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG49_RS00005 (MPG49_00005) dnaA 1..1368 (+) 1368 WP_053459825.1 chromosomal replication initiator protein DnaA -
  MPG49_RS00010 (MPG49_00010) comH 1589..3028 (+) 1440 WP_245052311.1 competence protein Machinery gene
  MPG49_RS00020 (MPG49_00020) - 3206..3958 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  MPG49_RS00025 (MPG49_00025) - 3955..4590 (-) 636 WP_000668030.1 outer membrane protein -
  MPG49_RS00030 (MPG49_00030) - 4594..4947 (-) 354 WP_154410003.1 hypothetical protein -
  MPG49_RS00035 (MPG49_00035) recG 5029..6894 (+) 1866 WP_245052313.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54958.85 Da        Isoelectric Point: 7.4339

>NTDB_id=667981 MPG49_RS00010 WP_245052311.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe0001]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLNE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPRNSLLQPL
ATPSKISSANEVKTPTNDTKPPLRHSSEDQENNLFVTPPTEKTLPNNTPNTDTNEHNESNENRDNMEKQTIRDPNVKEFA
CGKWVYNDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEVKQNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667981 MPG49_RS00010 WP_245052311.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe0001]
ATGAAAAAAACTCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTAATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAGAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACACCGATACTA
ATGAACACAATGAAAGCAATGAGAATAGAGATAATATGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATAATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAATGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCAACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAATTCTAAAGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.023

100

0.91

Multiple sequence alignment