Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG23_RS07215 Genome accession   NZ_CP094172
Coordinates   1520017..1520298 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1515017..1525298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS07195 (MPG23_07195) - 1515728..1517158 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG23_RS07205 (MPG23_07205) comB4 1517389..1519752 (-) 2364 WP_245088224.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG23_RS07210 (MPG23_07210) comB3 1519754..1520017 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG23_RS07215 (MPG23_07215) comB2 1520017..1520298 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG23_RS07220 (MPG23_07220) - 1520443..1521270 (-) 828 WP_245088227.1 DUF5718 family protein -
  MPG23_RS07225 (MPG23_07225) - 1521359..1522411 (-) 1053 WP_245088230.1 MnmA/TRMU family protein -
  MPG23_RS07230 (MPG23_07230) dnaG 1522408..1524087 (-) 1680 WP_245088233.1 DNA primase -
  MPG23_RS07235 (MPG23_07235) groES 1524363..1524719 (+) 357 WP_096481042.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667980 MPG23_RS07215 WP_001272686.1 1520017..1520298(-) (comB2) [Helicobacter pylori strain Hpfe0002]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667980 MPG23_RS07215 WP_001272686.1 1520017..1520298(-) (comB2) [Helicobacter pylori strain Hpfe0002]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTTGCTGAAGGATTAGAAGGGTT
TTTTAATGCCCTAGAAGCCCAGCTCAAAAGTCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment