Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG23_RS07080 Genome accession   NZ_CP094172
Coordinates   1487040..1488353 (-) Length   437 a.a.
NCBI ID   WP_245088188.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482040..1493353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS07050 (MPG23_07050) nadC 1482503..1483324 (-) 822 WP_245088181.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG23_RS07055 (MPG23_07055) nadA 1483324..1484334 (-) 1011 WP_231261074.1 quinolinate synthase NadA -
  MPG23_RS07060 (MPG23_07060) - 1484324..1485127 (-) 804 WP_245088184.1 phosphatidylserine decarboxylase -
  MPG23_RS07065 (MPG23_07065) - 1485124..1485627 (-) 504 WP_000953104.1 hypothetical protein -
  MPG23_RS07070 (MPG23_07070) - 1485640..1486134 (-) 495 WP_000544981.1 hypothetical protein -
  MPG23_RS07075 (MPG23_07075) mqnP 1486127..1487011 (-) 885 WP_231215422.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG23_RS07080 (MPG23_07080) comEC/comE3 1487040..1488353 (-) 1314 WP_245088188.1 ComEC/Rec2 family competence protein Machinery gene
  MPG23_RS07085 (MPG23_07085) - 1488350..1489816 (-) 1467 WP_245088191.1 replicative DNA helicase -
  MPG23_RS07090 (MPG23_07090) - 1489827..1491221 (-) 1395 WP_245088194.1 NAD(P)H-hydrate dehydratase -
  MPG23_RS07095 (MPG23_07095) crdS 1491224..1492426 (-) 1203 WP_245089795.1 copper-sensing histidine kinase CrdS -
  MPG23_RS07100 (MPG23_07100) crdR 1492392..1493033 (-) 642 WP_021306498.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50271.40 Da        Isoelectric Point: 9.8860

>NTDB_id=667976 MPG23_RS07080 WP_245088188.1 1487040..1488353(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0002]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYVQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSVHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667976 MPG23_RS07080 WP_245088188.1 1487040..1488353(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0002]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGTGCAATTTTTTGGCAAAATTAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGTTCATTCAAGCGCTTTAGTGGGTAATTTATACCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCCTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGTTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment