Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG23_RS05575 Genome accession   NZ_CP094172
Coordinates   1177433..1177837 (-) Length   134 a.a.
NCBI ID   WP_245087713.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172433..1182837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS05535 (MPG23_05535) - 1172470..1173561 (-) 1092 Protein_1081 hypothetical protein -
  MPG23_RS05540 (MPG23_05540) - 1173551..1174336 (-) 786 WP_245064907.1 hypothetical protein -
  MPG23_RS05545 (MPG23_05545) - 1174336..1174722 (-) 387 WP_212855019.1 DUF1294 domain-containing protein -
  MPG23_RS07745 - 1174814..1174945 (-) 132 WP_280637690.1 hypothetical protein -
  MPG23_RS05550 (MPG23_05550) - 1175063..1175224 (-) 162 WP_245087707.1 lysozyme -
  MPG23_RS05555 (MPG23_05555) - 1175244..1175489 (-) 246 WP_245087710.1 lysozyme -
  MPG23_RS05560 (MPG23_05560) - 1175763..1176323 (-) 561 WP_096423741.1 hypothetical protein -
  MPG23_RS05565 (MPG23_05565) - 1176307..1176645 (-) 339 WP_000699916.1 hypothetical protein -
  MPG23_RS05570 (MPG23_05570) - 1176875..1177301 (-) 427 Protein_1089 tetratricopeptide repeat protein -
  MPG23_RS05575 (MPG23_05575) dprB 1177433..1177837 (-) 405 WP_245087713.1 Holliday junction resolvase RuvX Machinery gene
  MPG23_RS05580 (MPG23_05580) dprA 1177834..1178634 (-) 801 WP_245087716.1 DNA-processing protein DprA Machinery gene
  MPG23_RS05585 (MPG23_05585) minE 1178646..1178879 (-) 234 WP_130777953.1 cell division topological specificity factor MinE -
  MPG23_RS05590 (MPG23_05590) minD 1178876..1179682 (-) 807 WP_245087720.1 septum site-determining protein MinD -
  MPG23_RS05595 (MPG23_05595) ilvC 1179706..1180698 (-) 993 WP_245087724.1 ketol-acid reductoisomerase -
  MPG23_RS05605 (MPG23_05605) - 1180947..1181729 (+) 783 WP_245087726.1 NAD+ synthase -
  MPG23_RS05610 (MPG23_05610) - 1181726..1182664 (+) 939 WP_245087729.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15266.81 Da        Isoelectric Point: 8.5076

>NTDB_id=667972 MPG23_RS05575 WP_245087713.1 1177433..1177837(-) (dprB) [Helicobacter pylori strain Hpfe0002]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKDKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667972 MPG23_RS05575 WP_245087713.1 1177433..1177837(-) (dprB) [Helicobacter pylori strain Hpfe0002]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGATACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTGGAGCATTTGGGTAAGAAAGACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948

Multiple sequence alignment