Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG23_RS00010 Genome accession   NZ_CP094172
Coordinates   1588..3027 (+) Length   479 a.a.
NCBI ID   WP_245088466.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0002     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG23_RS00005 (MPG23_00005) dnaA 1..1368 (+) 1368 WP_245088464.1 chromosomal replication initiator protein DnaA -
  MPG23_RS00010 (MPG23_00010) comH 1588..3027 (+) 1440 WP_245088466.1 competence protein Machinery gene
  MPG23_RS00020 (MPG23_00020) - 3205..3957 (+) 753 WP_220876558.1 exodeoxyribonuclease III -
  MPG23_RS00025 (MPG23_00025) - 3954..4589 (-) 636 WP_015642211.1 outer membrane protein -
  MPG23_RS00030 (MPG23_00030) - 4593..4946 (-) 354 WP_180467791.1 hypothetical protein -
  MPG23_RS00035 (MPG23_00035) recG 5029..6894 (+) 1866 WP_245088468.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54912.76 Da        Isoelectric Point: 6.9189

>NTDB_id=667958 MPG23_RS00010 WP_245088466.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe0002]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQSSQNFSYSESKLGSKNPKSSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNFFVTPPTEKTLPNNTPNADTNEHHESNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=667958 MPG23_RS00010 WP_245088466.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe0002]
ATGAAAAAAACTCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATTTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTTCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAGCAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACTTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACAATTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACACAATTAGTAAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AGATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.925

Multiple sequence alignment