Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG20_RS06870 Genome accession   NZ_CP094171
Coordinates   1433442..1434755 (-) Length   437 a.a.
NCBI ID   WP_245074116.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1434752..1446059 1433442..1434755 flank -3


Gene organization within MGE regions


Location: 1433442..1446059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS06870 (MPG20_06870) comEC/comE3 1433442..1434755 (-) 1314 WP_245074116.1 ComEC/Rec2 family competence protein Machinery gene
  MPG20_RS06875 (MPG20_06875) - 1434752..1436218 (-) 1467 WP_245074118.1 replicative DNA helicase -
  MPG20_RS06880 (MPG20_06880) - 1436229..1437623 (-) 1395 WP_245074120.1 NAD(P)H-hydrate dehydratase -
  MPG20_RS06885 (MPG20_06885) crdS 1437626..1438828 (-) 1203 WP_245074914.1 copper-sensing histidine kinase CrdS -
  MPG20_RS06890 (MPG20_06890) crdR 1438794..1439435 (-) 642 WP_245074122.1 copper response regulator transcription factor CrdR -
  MPG20_RS06895 (MPG20_06895) - 1439520..1440791 (-) 1272 WP_245074124.1 restriction endonuclease subunit R -
  MPG20_RS06900 (MPG20_06900) - 1440807..1441589 (-) 783 WP_245074125.1 site-specific DNA-methyltransferase -
  MPG20_RS06905 (MPG20_06905) - 1441576..1442439 (-) 864 WP_245074127.1 site-specific DNA-methyltransferase -
  MPG20_RS06910 (MPG20_06910) - 1442584..1442946 (+) 363 WP_280637681.1 type II restriction endonuclease -
  MPG20_RS06915 (MPG20_06915) - 1442943..1443835 (+) 893 Protein_1352 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  MPG20_RS06920 (MPG20_06920) - 1443807..1446059 (+) 2253 WP_245074129.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50168.19 Da        Isoelectric Point: 9.8515

>NTDB_id=667953 MPG20_RS06870 WP_245074116.1 1433442..1434755(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0003]
MKDKTFQGVFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHVVGLGSLLDSILNMPLMIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667953 MPG20_RS06870 WP_245074116.1 1433442..1434755(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0003]
TTGAAAGATAAAACTTTTCAGGGGGTGTTTGAACTTCTCACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGTTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCACATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment