Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG20_RS05420 Genome accession   NZ_CP094171
Coordinates   1136333..1136737 (-) Length   134 a.a.
NCBI ID   WP_025455040.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131333..1141737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS05385 (MPG20_05385) - 1132362..1133147 (-) 786 WP_245073820.1 hypothetical protein -
  MPG20_RS05390 (MPG20_05390) - 1133147..1133536 (-) 390 WP_245074905.1 DUF1294 domain-containing protein -
  MPG20_RS07525 - 1133686..1133811 (-) 126 WP_280637673.1 hypothetical protein -
  MPG20_RS07580 - 1133861..1134110 (-) 250 Protein_1050 lysozyme -
  MPG20_RS05400 (MPG20_05400) - 1134088..1134543 (-) 456 WP_245073822.1 glycoside hydrolase family protein -
  MPG20_RS05405 (MPG20_05405) - 1134554..1135114 (-) 561 WP_245073824.1 hypothetical protein -
  MPG20_RS05410 (MPG20_05410) - 1135098..1135436 (-) 339 WP_050835086.1 hypothetical protein -
  MPG20_RS05415 (MPG20_05415) - 1135728..1136201 (-) 474 WP_280637674.1 tetratricopeptide repeat protein -
  MPG20_RS05420 (MPG20_05420) dprB 1136333..1136737 (-) 405 WP_025455040.1 Holliday junction resolvase RuvX Machinery gene
  MPG20_RS05425 (MPG20_05425) dprA 1136734..1137534 (-) 801 WP_154412748.1 DNA-processing protein DprA Machinery gene
  MPG20_RS05430 (MPG20_05430) minE 1137545..1137778 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG20_RS05435 (MPG20_05435) minD 1137775..1138581 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG20_RS05440 (MPG20_05440) ilvC 1138600..1139592 (-) 993 WP_245073826.1 ketol-acid reductoisomerase -
  MPG20_RS05450 (MPG20_05450) - 1139840..1140622 (+) 783 WP_245073828.1 NAD+ synthase -
  MPG20_RS05455 (MPG20_05455) - 1140619..1141557 (+) 939 WP_245073830.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15382.97 Da        Isoelectric Point: 8.6995

>NTDB_id=667949 MPG20_RS05420 WP_025455040.1 1136333..1136737(-) (dprB) [Helicobacter pylori strain Hpfe0003]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667949 MPG20_RS05420 WP_025455040.1 1136333..1136737(-) (dprB) [Helicobacter pylori strain Hpfe0003]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACATGAACGCACGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment