Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF82_RS06970 Genome accession   NZ_CP094170
Coordinates   1465026..1465307 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460026..1470307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS06950 (MPF82_06950) - 1460737..1462167 (-) 1431 WP_245089609.1 COG3014 family protein -
  MPF82_RS06960 (MPF82_06960) comB4 1462398..1464761 (-) 2364 WP_245089612.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF82_RS06965 (MPF82_06965) comB3 1464763..1465026 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPF82_RS06970 (MPF82_06970) comB2 1465026..1465307 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPF82_RS06975 (MPF82_06975) - 1465452..1466279 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPF82_RS06980 (MPF82_06980) - 1466370..1467422 (-) 1053 WP_245089615.1 MnmA/TRMU family protein -
  MPF82_RS06985 (MPF82_06985) dnaG 1467419..1469098 (-) 1680 WP_245089618.1 DNA primase -
  MPF82_RS06990 (MPF82_06990) groES 1469384..1469740 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667937 MPF82_RS06970 WP_001272686.1 1465026..1465307(-) (comB2) [Helicobacter pylori strain Hpfe0004]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667937 MPF82_RS06970 WP_001272686.1 1465026..1465307(-) (comB2) [Helicobacter pylori strain Hpfe0004]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment