Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPF82_RS06965 | Genome accession | NZ_CP094170 |
| Coordinates | 1464763..1465026 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe0004 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1459763..1470026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF82_RS06950 (MPF82_06950) | - | 1460737..1462167 (-) | 1431 | WP_245089609.1 | COG3014 family protein | - |
| MPF82_RS06960 (MPF82_06960) | comB4 | 1462398..1464761 (-) | 2364 | WP_245089612.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPF82_RS06965 (MPF82_06965) | comB3 | 1464763..1465026 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPF82_RS06970 (MPF82_06970) | comB2 | 1465026..1465307 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPF82_RS06975 (MPF82_06975) | - | 1465452..1466279 (-) | 828 | WP_154423423.1 | DUF5718 family protein | - |
| MPF82_RS06980 (MPF82_06980) | - | 1466370..1467422 (-) | 1053 | WP_245089615.1 | MnmA/TRMU family protein | - |
| MPF82_RS06985 (MPF82_06985) | dnaG | 1467419..1469098 (-) | 1680 | WP_245089618.1 | DNA primase | - |
| MPF82_RS06990 (MPF82_06990) | groES | 1469384..1469740 (+) | 357 | WP_000671954.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667936 MPF82_RS06965 WP_000584955.1 1464763..1465026(-) (comB3) [Helicobacter pylori strain Hpfe0004]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667936 MPF82_RS06965 WP_000584955.1 1464763..1465026(-) (comB3) [Helicobacter pylori strain Hpfe0004]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |