Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF82_RS06835 Genome accession   NZ_CP094170
Coordinates   1432089..1433402 (-) Length   437 a.a.
NCBI ID   WP_245089564.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427089..1438402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS06805 (MPF82_06805) nadC 1427552..1428373 (-) 822 WP_245089556.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF82_RS06810 (MPF82_06810) nadA 1428373..1429383 (-) 1011 WP_001141982.1 quinolinate synthase NadA -
  MPF82_RS06815 (MPF82_06815) - 1429370..1430176 (-) 807 WP_245089558.1 phosphatidylserine decarboxylase -
  MPF82_RS06820 (MPF82_06820) - 1430173..1430676 (-) 504 WP_154465344.1 helix-turn-helix domain-containing protein -
  MPF82_RS06825 (MPF82_06825) - 1430689..1431183 (-) 495 WP_000544981.1 hypothetical protein -
  MPF82_RS06830 (MPF82_06830) mqnP 1431176..1432060 (-) 885 WP_245089561.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF82_RS06835 (MPF82_06835) comEC/comE3 1432089..1433402 (-) 1314 WP_245089564.1 ComEC/Rec2 family competence protein Machinery gene
  MPF82_RS06840 (MPF82_06840) - 1433399..1434865 (-) 1467 WP_245089567.1 replicative DNA helicase -
  MPF82_RS06845 (MPF82_06845) - 1434876..1436270 (-) 1395 WP_245089570.1 NAD(P)H-hydrate dehydratase -
  MPF82_RS06850 (MPF82_06850) crdS 1436273..1437475 (-) 1203 WP_245090939.1 copper-sensing histidine kinase CrdS -
  MPF82_RS06855 (MPF82_06855) crdR 1437441..1438082 (-) 642 WP_154508686.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50021.90 Da        Isoelectric Point: 9.8315

>NTDB_id=667933 MPF82_RS06835 WP_245089564.1 1432089..1433402(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0004]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSYWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667933 MPF82_RS06835 WP_245089564.1 1432089..1433402(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0004]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGTATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCACGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTACTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATCTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCACATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment