Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF82_RS05375 Genome accession   NZ_CP094170
Coordinates   1131212..1131616 (-) Length   134 a.a.
NCBI ID   WP_245089176.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126212..1136616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS05335 (MPF82_05335) - 1126730..1127833 (-) 1104 Protein_1043 hypothetical protein -
  MPF82_RS05340 (MPF82_05340) - 1127823..1128296 (-) 474 Protein_1044 hypothetical protein -
  MPF82_RS05345 (MPF82_05345) - 1128335..1128716 (-) 382 Protein_1045 DUF1294 domain-containing protein -
  MPF82_RS05350 (MPF82_05350) - 1129060..1129221 (-) 162 WP_014536434.1 lysozyme -
  MPF82_RS05355 (MPF82_05355) - 1129241..1129741 (-) 501 WP_245089169.1 glycoside hydrolase family protein -
  MPF82_RS05360 (MPF82_05360) - 1129752..1130312 (-) 561 WP_245089173.1 hypothetical protein -
  MPF82_RS05365 (MPF82_05365) - 1130296..1130634 (-) 339 WP_000699916.1 hypothetical protein -
  MPF82_RS07480 - 1130823..1131077 (-) 255 WP_280637665.1 sel1 repeat family protein -
  MPF82_RS05375 (MPF82_05375) dprB 1131212..1131616 (-) 405 WP_245089176.1 Holliday junction resolvase RuvX Machinery gene
  MPF82_RS05380 (MPF82_05380) dprA 1131613..1132413 (-) 801 WP_245089180.1 DNA-processing protein DprA Machinery gene
  MPF82_RS05385 (MPF82_05385) minE 1132425..1132658 (-) 234 WP_245089184.1 cell division topological specificity factor MinE -
  MPF82_RS05390 (MPF82_05390) minD 1132655..1133461 (-) 807 WP_245089187.1 septum site-determining protein MinD -
  MPF82_RS05395 (MPF82_05395) ilvC 1133485..1134477 (-) 993 WP_245089190.1 ketol-acid reductoisomerase -
  MPF82_RS05405 (MPF82_05405) - 1134725..1135507 (+) 783 WP_245089193.1 NAD+ synthase -
  MPF82_RS05410 (MPF82_05410) - 1135504..1136442 (+) 939 WP_245089195.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15227.75 Da        Isoelectric Point: 8.2605

>NTDB_id=667929 MPF82_RS05375 WP_245089176.1 1131212..1131616(-) (dprB) [Helicobacter pylori strain Hpfe0004]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLGEKNIQVLVVGKPHESYADTNARIEYFIKLLDFKGE
IVFINEDSSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667929 MPF82_RS05375 WP_245089176.1 1131212..1131616(-) (dprB) [Helicobacter pylori strain Hpfe0004]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGTATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCTTCTAGAGATTTGAGCGATTTATTGGGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCCATGAAAGTTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGCTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGATGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment