Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF82_RS00010 Genome accession   NZ_CP094170
Coordinates   1580..3013 (+) Length   477 a.a.
NCBI ID   WP_245089771.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS00005 (MPF82_00005) dnaA 1..1368 (+) 1368 WP_154455815.1 chromosomal replication initiator protein DnaA -
  MPF82_RS00010 (MPF82_00010) comH 1580..3013 (+) 1434 WP_245089771.1 competence protein Machinery gene
  MPF82_RS00020 (MPF82_00020) - 3191..3943 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  MPF82_RS00025 (MPF82_00025) - 3940..4575 (-) 636 WP_000668030.1 outer membrane protein -
  MPF82_RS00030 (MPF82_00030) - 4579..4926 (-) 348 WP_245089774.1 hypothetical protein -
  MPF82_RS00035 (MPF82_00035) recG 5008..6879 (+) 1872 WP_245089777.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54718.74 Da        Isoelectric Point: 7.2023

>NTDB_id=667917 MPF82_RS00010 WP_245089771.1 1580..3013(+) (comH) [Helicobacter pylori strain Hpfe0004]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PSKINSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKILPNNTPNADINEHHESNENRDNVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYNNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEVKQNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667917 MPF82_RS00010 WP_245089771.1 1580..3013(+) (comH) [Helicobacter pylori strain Hpfe0004]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTTTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCCACT
CCTAGTAAAATAAACTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAATACTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACCATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAACAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGTAAAAGGGCCAGAGCACGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAGATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.918

Multiple sequence alignment