Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG70_RS06980 Genome accession   NZ_CP094168
Coordinates   1464152..1464433 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459152..1469433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS06960 (MPG70_06960) - 1459862..1461202 (-) 1341 WP_180399900.1 hypothetical protein -
  MPG70_RS06970 (MPG70_06970) comB4 1461523..1463886 (-) 2364 WP_245062056.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG70_RS06975 (MPG70_06975) comB3 1463889..1464152 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG70_RS06980 (MPG70_06980) comB2 1464152..1464433 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG70_RS06985 (MPG70_06985) - 1464578..1465405 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG70_RS06990 (MPG70_06990) - 1465496..1466548 (-) 1053 WP_245062057.1 MnmA/TRMU family protein -
  MPG70_RS06995 (MPG70_06995) dnaG 1466545..1468224 (-) 1680 WP_245062058.1 DNA primase -
  MPG70_RS07000 (MPG70_07000) groES 1468497..1468853 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667916 MPG70_RS06980 WP_001272686.1 1464152..1464433(-) (comB2) [Helicobacter pylori strain Hpfe0006]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667916 MPG70_RS06980 WP_001272686.1 1464152..1464433(-) (comB2) [Helicobacter pylori strain Hpfe0006]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment