Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG70_RS06975 Genome accession   NZ_CP094168
Coordinates   1463889..1464152 (-) Length   87 a.a.
NCBI ID   WP_048944994.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458889..1469152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS06960 (MPG70_06960) - 1459862..1461202 (-) 1341 WP_180399900.1 hypothetical protein -
  MPG70_RS06970 (MPG70_06970) comB4 1461523..1463886 (-) 2364 WP_245062056.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG70_RS06975 (MPG70_06975) comB3 1463889..1464152 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG70_RS06980 (MPG70_06980) comB2 1464152..1464433 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG70_RS06985 (MPG70_06985) - 1464578..1465405 (-) 828 WP_154423423.1 DUF5718 family protein -
  MPG70_RS06990 (MPG70_06990) - 1465496..1466548 (-) 1053 WP_245062057.1 MnmA/TRMU family protein -
  MPG70_RS06995 (MPG70_06995) dnaG 1466545..1468224 (-) 1680 WP_245062058.1 DNA primase -
  MPG70_RS07000 (MPG70_07000) groES 1468497..1468853 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10090.20 Da        Isoelectric Point: 9.5507

>NTDB_id=667915 MPG70_RS06975 WP_048944994.1 1463889..1464152(-) (comB3) [Helicobacter pylori strain Hpfe0006]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667915 MPG70_RS06975 WP_048944994.1 1463889..1464152(-) (comB3) [Helicobacter pylori strain Hpfe0006]
ATGATTATCTTGTCAGCGAGTGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTCGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment