Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG70_RS06835 Genome accession   NZ_CP094168
Coordinates   1428072..1429385 (-) Length   437 a.a.
NCBI ID   WP_245062046.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423072..1434385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS06805 (MPG70_06805) nadC 1423535..1424356 (-) 822 WP_245062042.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG70_RS06810 (MPG70_06810) nadA 1424356..1425366 (-) 1011 WP_245062043.1 quinolinate synthase NadA -
  MPG70_RS06815 (MPG70_06815) - 1425356..1426159 (-) 804 WP_245062044.1 phosphatidylserine decarboxylase -
  MPG70_RS06820 (MPG70_06820) - 1426156..1426659 (-) 504 WP_017281583.1 hypothetical protein -
  MPG70_RS06825 (MPG70_06825) - 1426672..1427166 (-) 495 WP_165531738.1 hypothetical protein -
  MPG70_RS06830 (MPG70_06830) mqnP 1427159..1428043 (-) 885 WP_245062045.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG70_RS06835 (MPG70_06835) comEC/comE3 1428072..1429385 (-) 1314 WP_245062046.1 ComEC/Rec2 family competence protein Machinery gene
  MPG70_RS06840 (MPG70_06840) - 1429382..1430848 (-) 1467 WP_245062047.1 replicative DNA helicase -
  MPG70_RS06845 (MPG70_06845) - 1430859..1432253 (-) 1395 WP_245062048.1 NAD(P)H-hydrate dehydratase -
  MPG70_RS06850 (MPG70_06850) crdS 1432256..1433458 (-) 1203 WP_245062925.1 copper-sensing histidine kinase CrdS -
  MPG70_RS06855 (MPG70_06855) crdR 1433424..1434065 (-) 642 WP_154433930.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50042.00 Da        Isoelectric Point: 9.8515

>NTDB_id=667912 MPG70_RS06835 WP_245062046.1 1428072..1429385(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0006]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTIFVSSPLWLLGAHLFLT
ILSARFFKVYLSMNILGAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667912 MPG70_RS06835 WP_245062046.1 1428072..1429385(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0006]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTTTTGCATGCTGTAGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTGGGGGCACATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATATTTTAGGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment