Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG70_RS05355 Genome accession   NZ_CP094168
Coordinates   1126702..1127106 (-) Length   134 a.a.
NCBI ID   WP_245061792.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121702..1132106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS05310 (MPG70_05310) - 1121800..1122888 (-) 1089 WP_245061780.1 hypothetical protein -
  MPG70_RS05315 (MPG70_05315) - 1122878..1123663 (-) 786 WP_245061782.1 hypothetical protein -
  MPG70_RS05320 (MPG70_05320) - 1123663..1124050 (-) 388 Protein_1041 DUF1294 domain-containing protein -
  MPG70_RS05330 (MPG70_05330) - 1124390..1124776 (-) 387 WP_245061784.1 lysozyme -
  MPG70_RS05335 (MPG70_05335) - 1124733..1125068 (-) 336 WP_245061786.1 lysozyme -
  MPG70_RS05340 (MPG70_05340) - 1125079..1125639 (-) 561 WP_245061788.1 hypothetical protein -
  MPG70_RS05345 (MPG70_05345) - 1125623..1125961 (-) 339 WP_000699916.1 hypothetical protein -
  MPG70_RS05350 (MPG70_05350) - 1126092..1126571 (-) 480 WP_245061790.1 tetratricopeptide repeat protein -
  MPG70_RS05355 (MPG70_05355) dprB 1126702..1127106 (-) 405 WP_245061792.1 Holliday junction resolvase RuvX Machinery gene
  MPG70_RS05360 (MPG70_05360) dprA 1127103..1127903 (-) 801 WP_154502027.1 DNA-processing protein DprA Machinery gene
  MPG70_RS05365 (MPG70_05365) minE 1127911..1128153 (-) 243 WP_245061800.1 cell division topological specificity factor MinE -
  MPG70_RS05370 (MPG70_05370) minD 1128150..1128956 (-) 807 WP_121296737.1 septum site-determining protein MinD -
  MPG70_RS05375 (MPG70_05375) ilvC 1128980..1129972 (-) 993 WP_245061802.1 ketol-acid reductoisomerase -
  MPG70_RS05385 (MPG70_05385) - 1130224..1131006 (+) 783 WP_245061803.1 NAD+ synthase -
  MPG70_RS05390 (MPG70_05390) - 1131003..1131941 (+) 939 WP_245061805.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15343.79 Da        Isoelectric Point: 8.9935

>NTDB_id=667908 MPG70_RS05355 WP_245061792.1 1126702..1127106(-) (dprB) [Helicobacter pylori strain Hpfe0006]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667908 MPG70_RS05355 WP_245061792.1 1126702..1127106(-) (dprB) [Helicobacter pylori strain Hpfe0006]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATCTTACCTTTAGAAGC
GATTTTACGCCAAAACAGGAATCAGGCCTCTAGAGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAATATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTCATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94

Multiple sequence alignment