Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG70_RS00010 Genome accession   NZ_CP094168
Coordinates   1590..3020 (+) Length   476 a.a.
NCBI ID   WP_245062119.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS00005 (MPG70_00005) dnaA 1..1368 (+) 1368 WP_245062117.1 chromosomal replication initiator protein DnaA -
  MPG70_RS00010 (MPG70_00010) comH 1590..3020 (+) 1431 WP_245062119.1 competence protein Machinery gene
  MPG70_RS00020 (MPG70_00020) - 3198..3950 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  MPG70_RS00025 (MPG70_00025) - 3947..4582 (-) 636 WP_000668030.1 outer membrane protein -
  MPG70_RS00030 (MPG70_00030) - 4586..4939 (-) 354 WP_245062120.1 hypothetical protein -
  MPG70_RS00035 (MPG70_00035) recG 5021..6886 (+) 1866 WP_245062122.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54554.53 Da        Isoelectric Point: 7.0003

>NTDB_id=667896 MPG70_RS00010 WP_245062119.1 1590..3020(+) (comH) [Helicobacter pylori strain Hpfe0006]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYTEFKLGSKNPKNSLLQPLAT
PIISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDNVEKQAIRDPNVKEFACGK
WVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSST
EKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNLN
EKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=667896 MPG70_RS00010 WP_245062119.1 1590..3020(+) (comH) [Helicobacter pylori strain Hpfe0006]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTAACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAGCCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACACAGAGTTCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTATAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGATCA
AGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAATGAACACA
ATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGGAAG
TGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGCGAC
AGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTGTTC
ATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCTACA
GAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACAACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACAAGC
GTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGATGATCAAACAGAGC
CGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTGAAT
GAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAAGA
ATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAAGCA
CGCCTTTGAGTATTGAAAATTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.924

Multiple sequence alignment