Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG42_RS06870 Genome accession   NZ_CP094167
Coordinates   1428375..1429688 (-) Length   437 a.a.
NCBI ID   WP_245028354.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423375..1434688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG42_RS06840 (MPG42_06840) nadC 1423838..1424659 (-) 822 WP_245013442.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG42_RS06845 (MPG42_06845) nadA 1424659..1425669 (-) 1011 WP_180515877.1 quinolinate synthase NadA -
  MPG42_RS06850 (MPG42_06850) - 1425656..1426462 (-) 807 WP_245013443.1 phosphatidylserine decarboxylase -
  MPG42_RS06855 (MPG42_06855) - 1426459..1426962 (-) 504 WP_245028352.1 helix-turn-helix domain-containing protein -
  MPG42_RS06860 (MPG42_06860) - 1426975..1427469 (-) 495 WP_000544980.1 hypothetical protein -
  MPG42_RS06865 (MPG42_06865) mqnP 1427462..1428346 (-) 885 WP_000913965.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG42_RS06870 (MPG42_06870) comEC/comE3 1428375..1429688 (-) 1314 WP_245028354.1 ComEC/Rec2 family competence protein Machinery gene
  MPG42_RS06875 (MPG42_06875) - 1429685..1431151 (-) 1467 WP_245028356.1 replicative DNA helicase -
  MPG42_RS06880 (MPG42_06880) - 1431162..1432556 (-) 1395 WP_245028358.1 NAD(P)H-hydrate dehydratase -
  MPG42_RS06885 (MPG42_06885) crdS 1432559..1433761 (-) 1203 WP_245029074.1 copper-sensing histidine kinase CrdS -
  MPG42_RS06890 (MPG42_06890) crdR 1433727..1434368 (-) 642 WP_245028360.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50090.98 Da        Isoelectric Point: 9.8014

>NTDB_id=667891 MPG42_RS06870 WP_245028354.1 1428375..1429688(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0007]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLCLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLN
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSTGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667891 MPG42_RS06870 WP_245028354.1 1428375..1429688(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0007]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTGTTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGTGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATTGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAAC
GCACTAGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCCATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCCGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment