Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG18_RS07165 Genome accession   NZ_CP094165
Coordinates   1491601..1492914 (-) Length   437 a.a.
NCBI ID   WP_245077934.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486601..1497914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS07135 (MPG18_07135) nadC 1487064..1487885 (-) 822 WP_245077930.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG18_RS07140 (MPG18_07140) nadA 1487885..1488895 (-) 1011 WP_245077932.1 quinolinate synthase NadA -
  MPG18_RS07145 (MPG18_07145) - 1488885..1489688 (-) 804 WP_212778411.1 phosphatidylserine decarboxylase -
  MPG18_RS07150 (MPG18_07150) - 1489685..1490188 (-) 504 WP_000953102.1 hypothetical protein -
  MPG18_RS07155 (MPG18_07155) - 1490201..1490695 (-) 495 WP_000544981.1 hypothetical protein -
  MPG18_RS07160 (MPG18_07160) mqnP 1490688..1491572 (-) 885 WP_000913965.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG18_RS07165 (MPG18_07165) comEC/comE3 1491601..1492914 (-) 1314 WP_245077934.1 ComEC/Rec2 family competence protein Machinery gene
  MPG18_RS07170 (MPG18_07170) - 1492911..1494377 (-) 1467 WP_245077936.1 replicative DNA helicase -
  MPG18_RS07175 (MPG18_07175) - 1494388..1495782 (-) 1395 WP_245077938.1 NAD(P)H-hydrate dehydratase -
  MPG18_RS07180 (MPG18_07180) crdS 1495785..1496987 (-) 1203 WP_245078722.1 copper-sensing histidine kinase CrdS -
  MPG18_RS07185 (MPG18_07185) crdR 1496953..1497594 (-) 642 WP_245078723.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50023.05 Da        Isoelectric Point: 9.7169

>NTDB_id=667870 MPG18_RS07165 WP_245077934.1 1491601..1492914(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0011]
MKDKTFQGAFELLITPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRYFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISISSPLWLLGVHLFLT
ILSACFFKVYLSMNVLGAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667870 MPG18_RS07165 WP_245077934.1 1491601..1492914(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0011]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTATAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCTATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTATTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGCGCATGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAGGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment