Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG18_RS02335 Genome accession   NZ_CP094165
Coordinates   495559..495963 (+) Length   134 a.a.
NCBI ID   WP_245078391.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 490559..500963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS02300 (MPG18_02300) - 490732..491670 (-) 939 WP_245078383.1 tetraacyldisaccharide 4'-kinase -
  MPG18_RS02305 (MPG18_02305) - 491667..492449 (-) 783 WP_245078385.1 NAD+ synthase -
  MPG18_RS02315 (MPG18_02315) ilvC 492698..493690 (+) 993 WP_245078387.1 ketol-acid reductoisomerase -
  MPG18_RS02320 (MPG18_02320) minD 493714..494520 (+) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG18_RS02325 (MPG18_02325) minE 494517..494750 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  MPG18_RS02330 (MPG18_02330) dprA 494762..495562 (+) 801 WP_245078389.1 DNA-processing protein DprA Machinery gene
  MPG18_RS02335 (MPG18_02335) dprB 495559..495963 (+) 405 WP_245078391.1 Holliday junction resolvase RuvX Machinery gene
  MPG18_RS02340 (MPG18_02340) - 496096..496575 (+) 480 WP_245078393.1 tetratricopeptide repeat protein -
  MPG18_RS02345 (MPG18_02345) - 496702..497040 (+) 339 WP_000699911.1 hypothetical protein -
  MPG18_RS02350 (MPG18_02350) - 497024..497584 (+) 561 WP_245078395.1 hypothetical protein -
  MPG18_RS02355 (MPG18_02355) - 497595..497759 (+) 165 WP_015428734.1 hypothetical protein -
  MPG18_RS02360 (MPG18_02360) - 497887..498276 (+) 390 WP_245078397.1 lysozyme -
  MPG18_RS02365 (MPG18_02365) - 498326..498478 (+) 153 WP_245078736.1 tetratricopeptide repeat protein -
  MPG18_RS02370 (MPG18_02370) - 498608..498995 (+) 388 Protein_465 DUF1294 domain-containing protein -
  MPG18_RS02375 (MPG18_02375) - 498995..499780 (+) 786 WP_245078398.1 hypothetical protein -
  MPG18_RS02380 (MPG18_02380) - 499770..500881 (+) 1112 Protein_467 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15218.73 Da        Isoelectric Point: 9.1639

>NTDB_id=667864 MPG18_RS02335 WP_245078391.1 495559..495963(+) (dprB) [Helicobacter pylori strain Hpfe0011]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667864 MPG18_RS02335 WP_245078391.1 495559..495963(+) (dprB) [Helicobacter pylori strain Hpfe0011]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGTATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGTGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAAC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment