Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG84_RS07135 Genome accession   NZ_CP094164
Coordinates   1499274..1500587 (-) Length   437 a.a.
NCBI ID   WP_245059316.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494274..1505587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS07105 (MPG84_07105) nadC 1494737..1495558 (-) 822 WP_245059307.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG84_RS07110 (MPG84_07110) nadA 1495558..1496568 (-) 1011 WP_245059309.1 quinolinate synthase NadA -
  MPG84_RS07115 (MPG84_07115) - 1496555..1497361 (-) 807 WP_245059311.1 phosphatidylserine decarboxylase -
  MPG84_RS07120 (MPG84_07120) - 1497358..1497861 (-) 504 WP_245059312.1 helix-turn-helix domain-containing protein -
  MPG84_RS07125 (MPG84_07125) - 1497874..1498368 (-) 495 WP_195836459.1 hypothetical protein -
  MPG84_RS07130 (MPG84_07130) mqnP 1498361..1499245 (-) 885 WP_245059314.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG84_RS07135 (MPG84_07135) comEC/comE3 1499274..1500587 (-) 1314 WP_245059316.1 ComEC/Rec2 family competence protein Machinery gene
  MPG84_RS07140 (MPG84_07140) - 1500584..1502050 (-) 1467 WP_245059318.1 replicative DNA helicase -
  MPG84_RS07145 (MPG84_07145) - 1502062..1503456 (-) 1395 WP_245059320.1 NAD(P)H-hydrate dehydratase -
  MPG84_RS07150 (MPG84_07150) crdS 1503459..1504661 (-) 1203 WP_245060211.1 copper-sensing histidine kinase CrdS -
  MPG84_RS07155 (MPG84_07155) crdR 1504627..1505268 (-) 642 WP_245059322.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50144.20 Da        Isoelectric Point: 9.8315

>NTDB_id=667846 MPG84_RS07135 WP_245059316.1 1499274..1500587(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0012]
MKDKTFQGAFELLVTPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIITHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667846 MPG84_RS07135 WP_245059316.1 1499274..1500587(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0012]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGTAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAGTCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGAGCG
TTTCTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment