Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG84_RS05390 Genome accession   NZ_CP094164
Coordinates   1140672..1141076 (-) Length   134 a.a.
NCBI ID   WP_180593235.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135672..1146076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS05355 (MPG84_05355) - 1135949..1137091 (-) 1143 WP_245058982.1 hypothetical protein -
  MPG84_RS05360 (MPG84_05360) - 1137075..1137860 (-) 786 WP_245058984.1 hypothetical protein -
  MPG84_RS05365 (MPG84_05365) - 1137860..1138241 (-) 382 Protein_1043 DUF1294 domain-containing protein -
  MPG84_RS05370 (MPG84_05370) - 1138561..1138722 (-) 162 WP_245058986.1 lysozyme -
  MPG84_RS05375 (MPG84_05375) - 1138874..1139116 (-) 243 WP_245058988.1 hypothetical protein -
  MPG84_RS05380 (MPG84_05380) - 1139255..1139815 (-) 561 WP_245058990.1 hypothetical protein -
  MPG84_RS05385 (MPG84_05385) - 1139799..1140137 (-) 339 WP_154426247.1 hypothetical protein -
  MPG84_RS07855 - 1140327..1140515 (-) 189 WP_342370458.1 SEL1-like repeat protein -
  MPG84_RS05390 (MPG84_05390) dprB 1140672..1141076 (-) 405 WP_180593235.1 Holliday junction resolvase RuvX Machinery gene
  MPG84_RS05395 (MPG84_05395) dprA 1141073..1141873 (-) 801 WP_245058992.1 DNA-processing protein DprA Machinery gene
  MPG84_RS05400 (MPG84_05400) minE 1141885..1142118 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG84_RS05405 (MPG84_05405) minD 1142115..1142921 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG84_RS05410 (MPG84_05410) ilvC 1142940..1143932 (-) 993 WP_245058994.1 ketol-acid reductoisomerase -
  MPG84_RS05420 (MPG84_05420) - 1144181..1144963 (+) 783 WP_245058996.1 NAD+ synthase -
  MPG84_RS05425 (MPG84_05425) - 1144960..1145898 (+) 939 WP_245058998.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15267.87 Da        Isoelectric Point: 9.8304

>NTDB_id=667840 MPG84_RS05390 WP_180593235.1 1140672..1141076(-) (dprB) [Helicobacter pylori strain Hpfe0012]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667840 MPG84_RS05390 WP_180593235.1 1140672..1141076(-) (dprB) [Helicobacter pylori strain Hpfe0012]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCGTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment