Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG84_RS00010 Genome accession   NZ_CP094164
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245059469.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS00005 (MPG84_00005) dnaA 1..1368 (+) 1368 WP_245059467.1 chromosomal replication initiator protein DnaA -
  MPG84_RS00010 (MPG84_00010) comH 1589..3022 (+) 1434 WP_245059469.1 competence protein Machinery gene
  MPG84_RS00020 (MPG84_00020) - 3200..3952 (+) 753 WP_154452021.1 exodeoxyribonuclease III -
  MPG84_RS00025 (MPG84_00025) - 3949..4584 (-) 636 WP_000668030.1 outer membrane protein -
  MPG84_RS00030 (MPG84_00030) - 4588..4932 (-) 345 WP_245059471.1 hypothetical protein -
  MPG84_RS00035 (MPG84_00035) recG 5014..6879 (+) 1866 WP_245059473.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54748.59 Da        Isoelectric Point: 7.0005

>NTDB_id=667829 MPG84_RS00010 WP_245059469.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe0012]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTVIVYQPPDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PNKISSTNEVKVPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADTNEHNESNENRDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITIPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667829 MPG84_RS00010 WP_245059469.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe0012]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTTTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCTACTGTAATTGTCTATCAACCCCCTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTAAAAGAGTCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCACTAATGAAGTTAAAGTGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAATCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTATCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925

Multiple sequence alignment