Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG04_RS06980 Genome accession   NZ_CP094161
Coordinates   1464470..1464751 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0015     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459470..1469751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG04_RS06960 (MPG04_06960) - 1460200..1461540 (-) 1341 WP_245044273.1 hypothetical protein -
  MPG04_RS06970 (MPG04_06970) comB4 1461842..1464205 (-) 2364 WP_245044275.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG04_RS06975 (MPG04_06975) comB3 1464207..1464470 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG04_RS06980 (MPG04_06980) comB2 1464470..1464751 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG04_RS06985 (MPG04_06985) - 1464896..1465723 (-) 828 WP_245044277.1 DUF5718 family protein -
  MPG04_RS06990 (MPG04_06990) - 1465814..1466866 (-) 1053 WP_245044279.1 MnmA/TRMU family protein -
  MPG04_RS06995 (MPG04_06995) dnaG 1466863..1468542 (-) 1680 WP_245044281.1 DNA primase -
  MPG04_RS07000 (MPG04_07000) groES 1468819..1469175 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667828 MPG04_RS06980 WP_001272686.1 1464470..1464751(-) (comB2) [Helicobacter pylori strain Hpfe0015]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667828 MPG04_RS06980 WP_001272686.1 1464470..1464751(-) (comB2) [Helicobacter pylori strain Hpfe0015]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment