Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG04_RS06975 | Genome accession | NZ_CP094161 |
| Coordinates | 1464207..1464470 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe0015 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1459207..1469470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG04_RS06960 (MPG04_06960) | - | 1460200..1461540 (-) | 1341 | WP_245044273.1 | hypothetical protein | - |
| MPG04_RS06970 (MPG04_06970) | comB4 | 1461842..1464205 (-) | 2364 | WP_245044275.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG04_RS06975 (MPG04_06975) | comB3 | 1464207..1464470 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG04_RS06980 (MPG04_06980) | comB2 | 1464470..1464751 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG04_RS06985 (MPG04_06985) | - | 1464896..1465723 (-) | 828 | WP_245044277.1 | DUF5718 family protein | - |
| MPG04_RS06990 (MPG04_06990) | - | 1465814..1466866 (-) | 1053 | WP_245044279.1 | MnmA/TRMU family protein | - |
| MPG04_RS06995 (MPG04_06995) | dnaG | 1466863..1468542 (-) | 1680 | WP_245044281.1 | DNA primase | - |
| MPG04_RS07000 (MPG04_07000) | groES | 1468819..1469175 (+) | 357 | WP_000671946.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667827 MPG04_RS06975 WP_000584955.1 1464207..1464470(-) (comB3) [Helicobacter pylori strain Hpfe0015]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667827 MPG04_RS06975 WP_000584955.1 1464207..1464470(-) (comB3) [Helicobacter pylori strain Hpfe0015]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |