Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG293_RS33060 Genome accession   NZ_CP108867
Coordinates   7349171..7349377 (+) Length   68 a.a.
NCBI ID   WP_406002406.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00829     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7344171..7354377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG293_RS33040 (OG293_33060) - 7344576..7345475 (-) 900 WP_406002403.1 hypothetical protein -
  OG293_RS33045 (OG293_33065) - 7345731..7346963 (-) 1233 WP_406002404.1 hypothetical protein -
  OG293_RS33050 (OG293_33070) - 7347085..7347759 (-) 675 WP_406002405.1 hypothetical protein -
  OG293_RS33055 (OG293_33075) - 7347837..7348814 (-) 978 WP_331752170.1 transposase family protein -
  OG293_RS33060 (OG293_33080) dinR/lexA 7349171..7349377 (+) 207 WP_406002406.1 LexA family protein Regulator
  OG293_RS33065 (OG293_33085) - 7349394..7350107 (+) 714 WP_406002407.1 hypothetical protein -
  OG293_RS33070 (OG293_33090) - 7350190..7350570 (+) 381 WP_406002408.1 hypothetical protein -
  OG293_RS33075 (OG293_33095) - 7351063..7352220 (-) 1158 WP_406002409.1 hypothetical protein -

Sequence

Protein


Download         Length: 68 a.a.        Molecular weight: 7769.87 Da        Isoelectric Point: 9.4263

>NTDB_id=667825 OG293_RS33060 WP_406002406.1 7349171..7349377(+) (dinR/lexA) [Streptomyces sp. NBC_00829]
MDHLSSRQERILACIREWIAETGEAPSIRQIGEAVGLSSTSSVVYQLGRLEDRGLIKRGRRWRDCRIS

Nucleotide


Download         Length: 207 bp        

>NTDB_id=667825 OG293_RS33060 WP_406002406.1 7349171..7349377(+) (dinR/lexA) [Streptomyces sp. NBC_00829]
ATGGACCACCTGAGCTCCCGGCAGGAGCGCATCCTCGCCTGCATCAGGGAGTGGATCGCCGAGACAGGCGAGGCCCCGAG
CATCCGCCAGATCGGTGAGGCCGTCGGCCTCTCGTCCACCTCGTCCGTGGTCTACCAGCTCGGCCGTCTCGAAGACCGCG
GGCTGATCAAACGCGGCCGCCGCTGGCGGGACTGCCGCATCAGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

51.724

85.294

0.441