Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG04_RS06835 Genome accession   NZ_CP094161
Coordinates   1428395..1429708 (-) Length   437 a.a.
NCBI ID   WP_245044240.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0015     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423395..1434708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG04_RS06805 (MPG04_06805) nadC 1423858..1424679 (-) 822 WP_126131530.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG04_RS06810 (MPG04_06810) nadA 1424679..1425689 (-) 1011 WP_245044233.1 quinolinate synthase NadA -
  MPG04_RS06815 (MPG04_06815) - 1425676..1426482 (-) 807 WP_154501705.1 phosphatidylserine decarboxylase -
  MPG04_RS06820 (MPG04_06820) - 1426479..1426982 (-) 504 WP_245044236.1 helix-turn-helix domain-containing protein -
  MPG04_RS06825 (MPG04_06825) - 1426995..1427489 (-) 495 WP_000544981.1 hypothetical protein -
  MPG04_RS06830 (MPG04_06830) mqnP 1427482..1428366 (-) 885 WP_245044238.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG04_RS06835 (MPG04_06835) comEC/comE3 1428395..1429708 (-) 1314 WP_245044240.1 ComEC/Rec2 family competence protein Machinery gene
  MPG04_RS06840 (MPG04_06840) - 1429705..1431165 (-) 1461 WP_245044242.1 replicative DNA helicase -
  MPG04_RS06845 (MPG04_06845) - 1431176..1432570 (-) 1395 WP_245044244.1 NAD(P)H-hydrate dehydratase -
  MPG04_RS06850 (MPG04_06850) crdS 1432573..1433775 (-) 1203 WP_245033189.1 copper-sensing histidine kinase CrdS -
  MPG04_RS06855 (MPG04_06855) crdR 1433741..1434382 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50149.18 Da        Isoelectric Point: 9.7935

>NTDB_id=667824 MPG04_RS06835 WP_245044240.1 1428395..1429708(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0015]
MKDKTFQGAFELLITPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKHYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKISSFLARSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667824 MPG04_RS06835 WP_245044240.1 1428395..1429708(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0015]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTATAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGAGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACACTATTTCCCTTATAGAAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAATCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment