Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG04_RS05390 Genome accession   NZ_CP094161
Coordinates   1127691..1128095 (-) Length   134 a.a.
NCBI ID   WP_245043877.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122691..1133095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG04_RS05355 (MPG04_05355) - 1122985..1124049 (-) 1065 WP_245043867.1 hypothetical protein -
  MPG04_RS05360 (MPG04_05360) - 1124039..1124824 (-) 786 WP_245043869.1 hypothetical protein -
  MPG04_RS05365 (MPG04_05365) - 1124824..1125210 (-) 387 WP_245043871.1 DUF1294 domain-containing protein -
  MPG04_RS05370 (MPG04_05370) - 1125547..1125936 (-) 390 WP_245043873.1 lysozyme -
  MPG04_RS07505 - 1126105..1126236 (-) 132 WP_268221998.1 hypothetical protein -
  MPG04_RS05375 (MPG04_05375) - 1126247..1126807 (-) 561 WP_245043875.1 hypothetical protein -
  MPG04_RS05380 (MPG04_05380) - 1126791..1127129 (-) 339 WP_000699911.1 hypothetical protein -
  MPG04_RS07570 - 1127260..1127478 (-) 219 WP_342373667.1 hypothetical protein -
  MPG04_RS05390 (MPG04_05390) dprB 1127691..1128095 (-) 405 WP_245043877.1 Holliday junction resolvase RuvX Machinery gene
  MPG04_RS05395 (MPG04_05395) dprA 1128092..1128892 (-) 801 WP_096528030.1 DNA-processing protein DprA Machinery gene
  MPG04_RS05400 (MPG04_05400) minE 1128904..1129137 (-) 234 WP_000051409.1 cell division topological specificity factor MinE -
  MPG04_RS05405 (MPG04_05405) minD 1129134..1129940 (-) 807 WP_024116666.1 septum site-determining protein MinD -
  MPG04_RS05410 (MPG04_05410) ilvC 1129965..1130957 (-) 993 WP_245043879.1 ketol-acid reductoisomerase -
  MPG04_RS05420 (MPG04_05420) - 1131205..1131987 (+) 783 WP_245043881.1 NAD+ synthase -
  MPG04_RS05425 (MPG04_05425) - 1131984..1132922 (+) 939 WP_245043883.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15267.84 Da        Isoelectric Point: 8.5005

>NTDB_id=667820 MPG04_RS05390 WP_245043877.1 1127691..1128095(-) (dprB) [Helicobacter pylori strain Hpfe0015]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667820 MPG04_RS05390 WP_245043877.1 1127691..1128095(-) (dprB) [Helicobacter pylori strain Hpfe0015]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGTGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94

Multiple sequence alignment