Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BL105A_RS08870 Genome accession   NZ_AP014658
Coordinates   2123468..2125306 (-) Length   612 a.a.
NCBI ID   WP_041080943.1    Uniprot ID   A0A4R0S0E6
Organism   Bifidobacterium longum strain 105-A     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2118468..2130306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL105A_RS10945 (BL105A_1838) - 2118657..2119034 (+) 378 WP_012472100.1 hypothetical protein -
  BL105A_RS08850 (BL105A_1839) rsmI 2119061..2120071 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BL105A_RS08860 (BL105A_1841) - 2120769..2122187 (-) 1419 WP_041080942.1 MFS transporter -
  BL105A_RS08865 (BL105A_1842) - 2122269..2123315 (+) 1047 WP_022527934.1 FAD:protein FMN transferase -
  BL105A_RS08870 (BL105A_1843) rcrQ 2123468..2125306 (-) 1839 WP_041080943.1 ABC transporter ATP-binding protein Regulator
  BL105A_RS08875 (BL105A_1844) rcrP 2125463..2127334 (-) 1872 WP_041080944.1 ABC transporter ATP-binding protein Regulator
  BL105A_RS08880 (BL105A_1845) - 2127521..2128042 (-) 522 WP_041080945.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL105A_RS08885 (BL105A_1846) - 2128404..2128967 (+) 564 WP_041080946.1 BRO family protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 66998.41 Da        Isoelectric Point: 6.0728

>NTDB_id=66781 BL105A_RS08870 WP_041080943.1 2123468..2125306(-) (rcrQ) [Bifidobacterium longum strain 105-A]
MPRGPMGGGRTTEKPNDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIIGPDKLKDMTNEIVKGLPAIVNGKPVMNS
VDFNAVGRIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=66781 BL105A_RS08870 WP_041080943.1 2123468..2125306(-) (rcrQ) [Bifidobacterium longum strain 105-A]
ATGCCAAGAGGACCAATGGGCGGTGGGCGCACCACCGAAAAGCCCAACGACTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAAATCGTCAAGGGCCTGCCTGCCATCGTTAACGGCAAGCCGGTGATGAACTCG
GTCGATTTCAACGCGGTCGGCCGTATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGGCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTAGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGCCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATCCGCCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATTGTGGCGTTCATGATGTACATCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0S0E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.963

96.895

0.523

Multiple sequence alignment