Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG04_RS00010 Genome accession   NZ_CP094161
Coordinates   1602..3035 (+) Length   477 a.a.
NCBI ID   WP_245044383.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0015     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG04_RS00005 (MPG04_00005) dnaA 1..1368 (+) 1368 WP_245044381.1 chromosomal replication initiator protein DnaA -
  MPG04_RS00010 (MPG04_00010) comH 1602..3035 (+) 1434 WP_245044383.1 competence protein Machinery gene
  MPG04_RS00020 (MPG04_00020) - 3213..3965 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  MPG04_RS00025 (MPG04_00025) - 3962..4597 (-) 636 WP_000668030.1 outer membrane protein -
  MPG04_RS00030 (MPG04_00030) - 4601..4954 (-) 354 WP_000837005.1 hypothetical protein -
  MPG04_RS00035 (MPG04_00035) recG 5036..6901 (+) 1866 WP_245044385.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54707.63 Da        Isoelectric Point: 7.2362

>NTDB_id=667808 MPG04_RS00010 WP_245044383.1 1602..3035(+) (comH) [Helicobacter pylori strain Hpfe0015]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKILDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNANTNEHNESNENRDNVEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKHIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKNGTIRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667808 MPG04_RS00010 WP_245044383.1 1602..3035(+) (comH) [Helicobacter pylori strain Hpfe0015]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAGGGCACTTTTAAGGCTAAAATCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTAAAAGAGTCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCTGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCCTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACACTCCCTAACAACACCCCTAACGCTAATACTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATCAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACACATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAAACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.922

Multiple sequence alignment