Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG03_RS07105 Genome accession   NZ_CP094160
Coordinates   1470257..1470538 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0016     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465257..1475538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG03_RS07085 (MPG03_07085) - 1465968..1467308 (-) 1341 WP_245021689.1 hypothetical protein -
  MPG03_RS07095 (MPG03_07095) comB4 1467629..1469992 (-) 2364 WP_245021177.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG03_RS07100 (MPG03_07100) comB3 1469994..1470257 (-) 264 WP_245021178.1 competence protein ComB Machinery gene
  MPG03_RS07105 (MPG03_07105) comB2 1470257..1470538 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG03_RS07110 (MPG03_07110) - 1470683..1471510 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG03_RS07115 (MPG03_07115) - 1471601..1472653 (-) 1053 WP_245021179.1 MnmA/TRMU family protein -
  MPG03_RS07120 (MPG03_07120) dnaG 1472650..1474329 (-) 1680 WP_245021180.1 DNA primase -
  MPG03_RS07125 (MPG03_07125) groES 1474606..1474962 (+) 357 WP_245021181.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667807 MPG03_RS07105 WP_001272686.1 1470257..1470538(-) (comB2) [Helicobacter pylori strain Hpfe0016]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667807 MPG03_RS07105 WP_001272686.1 1470257..1470538(-) (comB2) [Helicobacter pylori strain Hpfe0016]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment