Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG03_RS07100 Genome accession   NZ_CP094160
Coordinates   1469994..1470257 (-) Length   87 a.a.
NCBI ID   WP_245021178.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0016     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1464994..1475257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG03_RS07085 (MPG03_07085) - 1465968..1467308 (-) 1341 WP_245021689.1 hypothetical protein -
  MPG03_RS07095 (MPG03_07095) comB4 1467629..1469992 (-) 2364 WP_245021177.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG03_RS07100 (MPG03_07100) comB3 1469994..1470257 (-) 264 WP_245021178.1 competence protein ComB Machinery gene
  MPG03_RS07105 (MPG03_07105) comB2 1470257..1470538 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG03_RS07110 (MPG03_07110) - 1470683..1471510 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG03_RS07115 (MPG03_07115) - 1471601..1472653 (-) 1053 WP_245021179.1 MnmA/TRMU family protein -
  MPG03_RS07120 (MPG03_07120) dnaG 1472650..1474329 (-) 1680 WP_245021180.1 DNA primase -
  MPG03_RS07125 (MPG03_07125) groES 1474606..1474962 (+) 357 WP_245021181.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10118.25 Da        Isoelectric Point: 9.5507

>NTDB_id=667806 MPG03_RS07100 WP_245021178.1 1469994..1470257(-) (comB3) [Helicobacter pylori strain Hpfe0016]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667806 MPG03_RS07100 WP_245021178.1 1469994..1470257(-) (comB3) [Helicobacter pylori strain Hpfe0016]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTCGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

94.253

100

0.943

Multiple sequence alignment