Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG03_RS06970 Genome accession   NZ_CP094160
Coordinates   1437107..1438420 (-) Length   437 a.a.
NCBI ID   WP_245021164.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432107..1443420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG03_RS06940 (MPG03_06940) nadC 1432570..1433391 (-) 822 WP_245021160.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG03_RS06945 (MPG03_06945) nadA 1433391..1434401 (-) 1011 WP_245021161.1 quinolinate synthase NadA -
  MPG03_RS06950 (MPG03_06950) - 1434391..1435194 (-) 804 WP_245021687.1 phosphatidylserine decarboxylase -
  MPG03_RS06955 (MPG03_06955) - 1435191..1435694 (-) 504 WP_000953083.1 hypothetical protein -
  MPG03_RS06960 (MPG03_06960) - 1435707..1436201 (-) 495 WP_245021162.1 hypothetical protein -
  MPG03_RS06965 (MPG03_06965) mqnP 1436194..1437078 (-) 885 WP_245021163.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG03_RS06970 (MPG03_06970) comEC/comE3 1437107..1438420 (-) 1314 WP_245021164.1 ComEC/Rec2 family competence protein Machinery gene
  MPG03_RS06975 (MPG03_06975) - 1438417..1439877 (-) 1461 WP_245021165.1 replicative DNA helicase -
  MPG03_RS06980 (MPG03_06980) - 1439888..1441282 (-) 1395 WP_245021166.1 NAD(P)H-hydrate dehydratase -
  MPG03_RS06985 (MPG03_06985) crdS 1441285..1442487 (-) 1203 WP_245021688.1 copper-sensing histidine kinase CrdS -
  MPG03_RS06990 (MPG03_06990) crdR 1442453..1443094 (-) 642 WP_048944979.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50104.12 Da        Isoelectric Point: 9.8513

>NTDB_id=667803 MPG03_RS06970 WP_245021164.1 1437107..1438420(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0016]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLDAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNIQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNIPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667803 MPG03_RS06970 WP_245021164.1 1437107..1438420(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0016]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTGCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGGACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACATCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAATCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCATGAGCATGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCCATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATCCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment