Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG03_RS02635 Genome accession   NZ_CP094160
Coordinates   539515..539919 (+) Length   134 a.a.
NCBI ID   WP_000599160.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 534515..544919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG03_RS02600 (MPG03_02600) - 534690..535628 (-) 939 WP_245021506.1 tetraacyldisaccharide 4'-kinase -
  MPG03_RS02605 (MPG03_02605) - 535625..536407 (-) 783 WP_245021507.1 NAD+ synthase -
  MPG03_RS02615 (MPG03_02615) ilvC 536654..537646 (+) 993 WP_245021508.1 ketol-acid reductoisomerase -
  MPG03_RS02620 (MPG03_02620) minD 537670..538476 (+) 807 WP_231191483.1 septum site-determining protein MinD -
  MPG03_RS02625 (MPG03_02625) minE 538473..538706 (+) 234 WP_131140926.1 cell division topological specificity factor MinE -
  MPG03_RS02630 (MPG03_02630) dprA 538718..539518 (+) 801 WP_245021509.1 DNA-processing protein DprA Machinery gene
  MPG03_RS02635 (MPG03_02635) dprB 539515..539919 (+) 405 WP_000599160.1 Holliday junction resolvase RuvX Machinery gene
  MPG03_RS02640 (MPG03_02640) - 540049..540411 (+) 363 WP_245021510.1 tetratricopeptide repeat protein -
  MPG03_RS02645 (MPG03_02645) - 540601..540939 (+) 339 WP_096528032.1 hypothetical protein -
  MPG03_RS02650 (MPG03_02650) - 540923..541483 (+) 561 WP_245021511.1 hypothetical protein -
  MPG03_RS02655 (MPG03_02655) - 541494..541994 (+) 501 WP_245021512.1 glycoside hydrolase family protein -
  MPG03_RS02660 (MPG03_02660) - 542014..542175 (+) 162 WP_245021513.1 lysozyme -
  MPG03_RS02665 (MPG03_02665) - 542187..542378 (+) 192 WP_280637261.1 hypothetical protein -
  MPG03_RS02670 (MPG03_02670) - 542511..542892 (+) 382 Protein_520 DUF1294 domain-containing protein -
  MPG03_RS02675 (MPG03_02675) - 542892..543677 (+) 786 WP_245021514.1 hypothetical protein -
  MPG03_RS02680 (MPG03_02680) - 543667..544791 (+) 1125 WP_245021515.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.75 Da        Isoelectric Point: 9.1725

>NTDB_id=667798 MPG03_RS02635 WP_000599160.1 539515..539919(+) (dprB) [Helicobacter pylori strain Hpfe0016]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667798 MPG03_RS02635 WP_000599160.1 539515..539919(+) (dprB) [Helicobacter pylori strain Hpfe0016]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTGCGCCACAATAGGAATCAAGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.744

99.254

0.97

Multiple sequence alignment