Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG77_RS07050 Genome accession   NZ_CP094159
Coordinates   1478858..1479139 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe0020     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473858..1484139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG77_RS07030 (MPG77_07030) - 1474569..1475909 (-) 1341 WP_180756186.1 hypothetical protein -
  MPG77_RS07040 (MPG77_07040) comB4 1476230..1478593 (-) 2364 WP_245109452.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG77_RS07045 (MPG77_07045) comB3 1478595..1478858 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG77_RS07050 (MPG77_07050) comB2 1478858..1479139 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG77_RS07055 (MPG77_07055) - 1479284..1480111 (-) 828 WP_220924215.1 DUF5718 family protein -
  MPG77_RS07060 (MPG77_07060) - 1480202..1481254 (-) 1053 WP_096391855.1 MnmA/TRMU family protein -
  MPG77_RS07065 (MPG77_07065) dnaG 1481251..1482930 (-) 1680 WP_245109453.1 DNA primase -
  MPG77_RS07070 (MPG77_07070) groES 1483206..1483562 (+) 357 WP_033122111.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667786 MPG77_RS07050 WP_001272686.1 1478858..1479139(-) (comB2) [Helicobacter pylori strain Hpfe0020]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667786 MPG77_RS07050 WP_001272686.1 1478858..1479139(-) (comB2) [Helicobacter pylori strain Hpfe0020]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTATTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment