Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG293_RS11630 Genome accession   NZ_CP108867
Coordinates   2783856..2784914 (-) Length   352 a.a.
NCBI ID   WP_405998716.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00829     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2778856..2789914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG293_RS11610 (OG293_11615) - 2778922..2779899 (-) 978 WP_405998712.1 ABC transporter permease -
  OG293_RS11615 (OG293_11620) - 2779892..2780815 (-) 924 WP_405998713.1 ABC transporter permease -
  OG293_RS11620 (OG293_11625) - 2780889..2782523 (-) 1635 WP_405998714.1 ABC transporter substrate-binding protein -
  OG293_RS11625 (OG293_11630) - 2782715..2783863 (-) 1149 WP_405998715.1 ABC transporter ATP-binding protein -
  OG293_RS11630 (OG293_11635) amiE 2783856..2784914 (-) 1059 WP_405998716.1 ABC transporter ATP-binding protein Regulator
  OG293_RS11635 (OG293_11640) - 2784929..2785882 (-) 954 WP_405998717.1 ABC transporter permease -
  OG293_RS11640 (OG293_11645) - 2785875..2786807 (-) 933 WP_405998718.1 ABC transporter permease -
  OG293_RS11645 (OG293_11650) - 2786982..2788619 (-) 1638 WP_405998719.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38562.56 Da        Isoelectric Point: 6.8277

>NTDB_id=667785 OG293_RS11630 WP_405998716.1 2783856..2784914(-) (amiE) [Streptomyces sp. NBC_00829]
MTIIDKTASVPAPRDGSDYEGSLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPQGEILFRGEDMLKMSPEERRQIRGRKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSKKDAKAKAIELMDRVK
IPAARARVNDYAHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELFAIKGLPPNLLRVPSGCAFNPRCVKAQDLCRT
DVPALHPVTEQDGRELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=667785 OG293_RS11630 WP_405998716.1 2783856..2784914(-) (amiE) [Streptomyces sp. NBC_00829]
ATGACCATCATCGACAAAACCGCGTCTGTCCCCGCCCCGCGCGACGGGAGCGACTACGAGGGTTCGCTGCTCGAAGTCCG
CGATCTGCATGTGGAGTTCCACACCCGAGACGGTGTGGCCAAGGCCGTCAACGGCGTCAACTACAGCGTCAGCGCCGGTG
AGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATGCCG
CCCGGCAGGATCCCGCAGGGAGAGATCCTCTTCCGCGGCGAGGACATGCTCAAGATGTCCCCGGAGGAGCGCCGGCAGAT
CCGTGGCCGCAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGCGTCCACCAGGGTCTGTCCAAGAAGGATGCCAAGGCCAAGGCCATCGAGCTGATGGACCGGGTCAAG
ATCCCCGCCGCCAGGGCCCGGGTCAACGACTACGCCCACCAGTTCTCCGGCGGTATGCGTCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGATCTCATCATCGCGGACGAGCCCACGACCGCGCTGGACGTGACCGTCCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTTCAGCGTGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCGGTCATGTACGCGGGACGGATCGTCGAGACCGCCCCGGTGCACGAGCTGTACAAGCGCCCGGC
GCACCCGTACACCCGCGGTCTCCTCGACTCGATTCCGCGTCTGGACCAGAAGGGCCAGGAGCTCTTCGCCATCAAGGGTC
TGCCGCCCAACCTCCTGCGTGTGCCTTCCGGTTGTGCGTTCAACCCGCGCTGTGTCAAGGCGCAGGACCTCTGCCGTACG
GACGTCCCGGCACTGCATCCGGTGACCGAGCAGGACGGCAGGGAACTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

52.759

82.386

0.435
  amiE Streptococcus thermophilus LMG 18311

52.414

82.386

0.432
  amiE Streptococcus thermophilus LMD-9

52.414

82.386

0.432
  oppD Streptococcus mutans UA159

47.403

87.5

0.415

Multiple sequence alignment