Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG77_RS06920 Genome accession   NZ_CP094159
Coordinates   1450936..1452249 (-) Length   437 a.a.
NCBI ID   WP_245109431.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0020     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1445936..1457249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG77_RS06890 (MPG77_06890) nadC 1446399..1447220 (-) 822 WP_245109428.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG77_RS06895 (MPG77_06895) nadA 1447220..1448230 (-) 1011 WP_220823520.1 quinolinate synthase NadA -
  MPG77_RS06900 (MPG77_06900) - 1448220..1449023 (-) 804 WP_245109429.1 phosphatidylserine decarboxylase -
  MPG77_RS06905 (MPG77_06905) - 1449020..1449523 (-) 504 WP_000953104.1 hypothetical protein -
  MPG77_RS06910 (MPG77_06910) - 1449536..1450030 (-) 495 WP_014537179.1 hypothetical protein -
  MPG77_RS06915 (MPG77_06915) mqnP 1450023..1450907 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG77_RS06920 (MPG77_06920) comEC/comE3 1450936..1452249 (-) 1314 WP_245109431.1 ComEC/Rec2 family competence protein Machinery gene
  MPG77_RS06925 (MPG77_06925) - 1452246..1453712 (-) 1467 WP_245109433.1 replicative DNA helicase -
  MPG77_RS06930 (MPG77_06930) - 1453723..1455117 (-) 1395 WP_245109435.1 NAD(P)H-hydrate dehydratase -
  MPG77_RS06935 (MPG77_06935) crdS 1455120..1456322 (-) 1203 WP_245110237.1 copper-sensing histidine kinase CrdS -
  MPG77_RS06940 (MPG77_06940) crdR 1456288..1456929 (-) 642 WP_245109437.1 copper response regulator transcription factor CrdR -
  MPG77_RS06945 (MPG77_06945) - 1457016..1457243 (-) 228 Protein_1355 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50158.05 Da        Isoelectric Point: 9.8315

>NTDB_id=667782 MPG77_RS06920 WP_245109431.1 1450936..1452249(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0020]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667782 MPG77_RS06920 WP_245109431.1 1450936..1452249(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0020]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCACTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGAATTTT
GAGCACGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment