Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG77_RS05380 Genome accession   NZ_CP094159
Coordinates   1132823..1133227 (-) Length   134 a.a.
NCBI ID   WP_180625606.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127823..1138227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG77_RS05335 (MPG77_05335) - 1127891..1129084 (-) 1194 WP_245109142.1 hypothetical protein -
  MPG77_RS05340 (MPG77_05340) - 1129074..1129859 (-) 786 WP_245109143.1 hypothetical protein -
  MPG77_RS05345 (MPG77_05345) - 1129859..1130188 (-) 330 Protein_1040 DUF1294 domain-containing protein -
  MPG77_RS07565 - 1130159..1130287 (+) 129 WP_280637902.1 hypothetical protein -
  MPG77_RS05350 (MPG77_05350) - 1130318..1130509 (-) 192 WP_245109144.1 hypothetical protein -
  MPG77_RS05355 (MPG77_05355) - 1130567..1131001 (-) 435 WP_245110222.1 hypothetical protein -
  MPG77_RS05360 (MPG77_05360) - 1131050..1131247 (-) 198 WP_121025311.1 lysozyme -
  MPG77_RS05365 (MPG77_05365) - 1131258..1131818 (-) 561 WP_245109145.1 hypothetical protein -
  MPG77_RS05370 (MPG77_05370) - 1131802..1132140 (-) 339 WP_245109146.1 hypothetical protein -
  MPG77_RS05375 (MPG77_05375) - 1132328..1132666 (-) 339 Protein_1047 tetratricopeptide repeat protein -
  MPG77_RS05380 (MPG77_05380) dprB 1132823..1133227 (-) 405 WP_180625606.1 Holliday junction resolvase RuvX Machinery gene
  MPG77_RS05385 (MPG77_05385) dprA 1133224..1134024 (-) 801 WP_245109147.1 DNA-processing protein DprA Machinery gene
  MPG77_RS05390 (MPG77_05390) minE 1134036..1134269 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG77_RS05395 (MPG77_05395) minD 1134266..1135072 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG77_RS05400 (MPG77_05400) ilvC 1135097..1136089 (-) 993 WP_245109148.1 ketol-acid reductoisomerase -
  MPG77_RS05410 (MPG77_05410) - 1136338..1137120 (+) 783 WP_245109149.1 NAD+ synthase -
  MPG77_RS05415 (MPG77_05415) - 1137117..1138055 (+) 939 WP_245109150.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15240.85 Da        Isoelectric Point: 9.1883

>NTDB_id=667778 MPG77_RS05380 WP_180625606.1 1132823..1133227(-) (dprB) [Helicobacter pylori strain Hpfe0020]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILECYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667778 MPG77_RS05380 WP_180625606.1 1132823..1133227(-) (dprB) [Helicobacter pylori strain Hpfe0020]
GTGATTTTGGCATGCGATGTGGGGCTGAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCTTTAGAGGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TTGGCAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGTATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGTGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment