Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG52_RS07285 Genome accession   NZ_CP094157
Coordinates   1531747..1533060 (-) Length   437 a.a.
NCBI ID   WP_180605981.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526747..1538060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS07255 (MPG52_07255) nadC 1527218..1528039 (-) 822 WP_245076612.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG52_RS07260 (MPG52_07260) nadA 1528039..1529043 (-) 1005 WP_245076614.1 quinolinate synthase NadA -
  MPG52_RS07265 (MPG52_07265) - 1529033..1529836 (-) 804 WP_245076616.1 phosphatidylserine decarboxylase -
  MPG52_RS07270 (MPG52_07270) - 1529833..1530336 (-) 504 WP_000953102.1 hypothetical protein -
  MPG52_RS07275 (MPG52_07275) - 1530349..1530843 (-) 495 WP_245076618.1 hypothetical protein -
  MPG52_RS07280 (MPG52_07280) mqnP 1530836..1531720 (-) 885 WP_245076620.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG52_RS07285 (MPG52_07285) comEC/comE3 1531747..1533060 (-) 1314 WP_180605981.1 ComEC/Rec2 family competence protein Machinery gene
  MPG52_RS07290 (MPG52_07290) - 1533057..1534523 (-) 1467 WP_245076622.1 replicative DNA helicase -
  MPG52_RS07295 (MPG52_07295) - 1534534..1535928 (-) 1395 WP_245076624.1 NAD(P)H-hydrate dehydratase -
  MPG52_RS07300 (MPG52_07300) crdS 1535931..1537133 (-) 1203 WP_245077240.1 copper-sensing histidine kinase CrdS -
  MPG52_RS07305 (MPG52_07305) crdR 1537099..1537740 (-) 642 WP_078244754.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50408.41 Da        Isoelectric Point: 9.9664

>NTDB_id=667765 MPG52_RS07285 WP_180605981.1 1531747..1533060(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0021]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGRIKFCSFLESLKSCFFQTYSFSLTRKHNFKSHLRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKNSSFLRRFFQAIALS
VLVFLNMLIVAHVFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667765 MPG52_RS07285 WP_180605981.1 1531747..1533060(-) (comEC/comE3) [Helicobacter pylori strain Hpfe0021]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACCTGGTGTGTGGGGTCATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAGGATCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTACTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTACTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAAATTCTTCTTTTTTAAGGCGATTTTTTCAAGCGATCGCATTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGTCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment