Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG52_RS00860 Genome accession   NZ_CP094157
Coordinates   182924..183187 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0021     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177924..188187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG52_RS00835 (MPG52_00835) groES 178209..178565 (-) 357 WP_000671963.1 co-chaperone GroES -
  MPG52_RS00840 (MPG52_00840) dnaG 178851..180530 (+) 1680 WP_245076803.1 DNA primase -
  MPG52_RS00845 (MPG52_00845) - 180527..181579 (+) 1053 WP_245076805.1 MnmA/TRMU family protein -
  MPG52_RS00850 (MPG52_00850) - 181671..182498 (+) 828 WP_245076807.1 DUF5718 family protein -
  MPG52_RS00855 (MPG52_00855) comB2 182643..182924 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG52_RS00860 (MPG52_00860) comB3 182924..183187 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  MPG52_RS00865 (MPG52_00865) comB4 183189..185552 (+) 2364 WP_245076809.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG52_RS00875 (MPG52_00875) - 185852..187192 (+) 1341 WP_245076811.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=667750 MPG52_RS00860 WP_000584956.1 182924..183187(+) (comB3) [Helicobacter pylori strain Hpfe0021]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667750 MPG52_RS00860 WP_000584956.1 182924..183187(+) (comB3) [Helicobacter pylori strain Hpfe0021]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGTGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment